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ViralVar-2.0.0

ViralVar is supported through a personal fund established by Arghavan Alisoltanidehkordi.

ViralVar 2.0.0 is a platform designed for the visualization of viral lineages and mutations, featuring specialized functions for studying the genome sequences of SARS-CoV-2.

ViralVar includes four main features:

1- Visualizing spatiotemporal dynamics of lineages.

2- Visualizing mutations in the context of protein 3D structure

3- Mutational analyis

*ViralVar manual provides guidance on formating input data or retriving the input data from GISAID. Download Manual

Interactive 3D Protein and Mutation Mapping

Acknowledgements
How to cite ViralVar

We gratefully acknowledge the authors from the originating laboratories and the submitting laboratories, who generated and shared via GISAID genetic sequence data on which this research is based, as well as structural biology groups contributing their structures to the PDB.

Alisoltani A, Jaroszewski L, Godzik A, Iranzadeh A, Simons LM, Dean TJ, Lorenzo-Redondo R, Hultquist JF, Ozer EA. ViralVar: a web tool for multilevel visualization of SARS-CoV-2 genomes. Viruses. 2022 Dec;14(12):2714.

ViralVar-2.0.0

ViralVar-2.0.0

ViralVar is supported through a personal fund established by Arghavan Alisoltanidehkordi.

ViralVar 2.0.0 is a platform designed for the visualization of viral lineages and mutations, featuring specialized functions for studying the genome sequences of SARS-CoV-2.

ViralVar includes four main features:

1- Visualizing spatiotemporal dynamics of lineages.

2- Visualizing mutations in the context of protein 3D structure

3- Mutational analyis

*ViralVar manual provides guidance on formating input data or retriving the input data from GISAID. Download Manual

Lineage Dynamics

Mutational Analysis

*Three columns `Collection date`, `Location` and `PANGO Lineage` are required (Download the input dictionary for more details and alternative formats).

**The collection data format should be in the YYYY-MM-DD ('2021-01-30')

**Example of Location format 'North America / USA / Illinois / McHenry County'

**Example of PANGO Lineage 'B.1.1.7'

**Upload size limit: ~200 MB (~300,000 genome sequences)'

* columns `AA Substitutions`,`PANGO lineage`, `Collection date`, and `GISAID_accession` are required (Download the input dictionary for more details and alternative formats).

**The collection data format should be in the YYYY-MM-DD ('2021-01-30')

**Example of AA Substitutions '(NSP1_I95V,N_S194L,Spike_D614G)'

**Example of PANGO Lineage 'B.1.1.7'

**Example of GISAID_accession 'EPI_ISL_1157423'

**Upload size limit: ~200 MB (~300,000 genome sequences)'

**Upload size limit: ~200 MB

Contact Information

Arghavan Alisoltani

Senior research associate

Northwestern University

arghavan.alisoltanidehkordi@northwestern.edu

arghavana85@gmail.com

(951)455-1355

We gratefully acknowledge the authors from the originating laboratories and the submitting laboratories, who generated and shared via GISAID genetic sequence data on which this research is based, as well as structural biology groups contributing their structures to the PDB.

Alisoltani A, Jaroszewski L, Godzik A, Iranzadeh A, Simons LM, Dean TJ, Lorenzo-Redondo R, Hultquist JF, Ozer EA. ViralVar: a web tool for multilevel visualization of SARS-CoV-2 genomes. Viruses. 2022 Dec;14(12):2714.

ViralVar-2.0.0

ViralVar-2.0.0

ViralVar is supported through a personal fund established by Arghavan Alisoltanidehkordi.

ViralVar 2.0.0 is a platform designed for the visualization of viral lineages and mutations, featuring specialized functions for studying the genome sequences of SARS-CoV-2. ViralVar includes four main features:

1- Visualizing spatiotemporal dynamics of lineages.

2- Visualizing mutations in the context of protein 3D structure

3- Mutational analyis

*ViralVar manual provides guidance on formating input data or retriving the input data from GISAID. Download Manual

Lineage Dynamics

Mutational Analysis

*Three columns `Collection date`, `Location` and `PANGO Lineage` are required (Download the input dictionary for more details and alternative formats).

**The collection data format should be in the YYYY-MM-DD ('2021-01-30')

**Example of Location format 'North America / USA / Illinois / McHenry County'

**Example of PANGO Lineage 'B.1.1.7'

**Upload size limit: ~200 MB (~300,000 genome sequences)'

* columns `AA Substitutions`,`PANGO lineage`, `Collection date`, and `GISAID_accession` are required (Download the input dictionary for more details and alternative formats).

**The collection data format should be in the YYYY-MM-DD ('2021-01-30')

**Example of AA Substitutions '(NSP1_I95V,N_S194L,Spike_D614G)'

**Example of PANGO Lineage 'B.1.1.7'

**Example of GISAID_accession 'EPI_ISL_1157423'

**Upload size limit: ~200 MB (~300,000 genome sequences)'

**Upload size limit: ~200 MB

Contact Information

Arghavan Alisoltani

Senior research associate

Northwestern University

arghavan.alisoltanidehkordi@northwestern.edu

arghavana85@gmail.com

(951)455-1355

We gratefully acknowledge the authors from the originating laboratories and the submitting laboratories, who generated and shared via GISAID genetic sequence data on which this research is based, as well as structural biology groups contributing their structures to the PDB.

Alisoltani A, Jaroszewski L, Godzik A, Iranzadeh A, Simons LM, Dean TJ, Lorenzo-Redondo R, Hultquist JF, Ozer EA. ViralVar: a web tool for multilevel visualization of SARS-CoV-2 genomes. Viruses. 2022 Dec;14(12):2714.

ViralVar 2.0.0 is a platform designed for the visualization of viral lineages and mutations, featuring specialized functions for studying the genome sequences of SARS-CoV-2.

ViralVar includes four main features: